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Show the third and fourth steps in the sequencing of oxytocin. Use figure 24-14 as a guide.

Short Answer

Expert verified

The most efficient method for sequencing peptides is Edman degradation. In this process, a peptide is treated with phenyl isothiocyanate that is followed by hydrolysis. The products formed from the degradation process are the peptide chain which is a shortened one and a heterocyclic derivative of the terminal amino acid known as phenylthiohydantoin.

Step by step solution

01

Edman degradation

The most efficient method for sequencing peptides is Edman degradation. In this process, a peptide is treated with phenyl isothiocyanate that is followed by hydrolysis. The products formed from the degradation process are the peptide chain which is a shortened one and a heterocyclic derivative of the terminal amino acid known as phenylthiohydantoin.

02

 First two steps in sequencing of oxytocin

The first two steps in sequencing oxytocin involves Edman degradation which cleaves the terminal amino acid and as a result of it, phenylthiohydantoin derivative is formed. The shortened peptide is readily available for the next steps.

03

 Third and fourth steps in sequencing of oxytocin

The third and fourth step in the sequencing of oxytocin are represented by the figures as shown below.

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Most popular questions from this chapter

Draw the resonance forms of a protonated guanidino group and explain why arginine has such a strongly basic isoelectric point.

The Sanger method for N-terminus determination is a less common alternative to the Edman degradation. In the Sanger method, the peptide is treated with the Sanger reagent, 2,4-dinitrofluorobenzene, and then hydrolyzed by reaction with 6 M aqueous HCl. The N-terminal amino acid is recovered as its 2,4-dinitrophenyl derivative and identified.

(a)Propose a mechanism for the reaction of the N terminus of the peptide with 2,4-dinitrofluorobenzene.

(b) Explain why the Edman degradation is usually preferred over the Sanger method.

A molecular weight determination has shown that an unknown peptide is a pentapeptide, and an amino acid analysis shows that it contains the following residues: one Gly, two Ala, one Met, one Phe. Treatment of the original pentapeptide with carboxypeptidase gives alanine as the first free amino acid released. Sequential treatment of the pentapeptide with phenyl isothiocyanate followed by mild hydrolysis gives the following derivatives:

Propose a structure for the unknown pentapeptide.

Aspartame(Nutrasweetยฎ) is a remarkably sweet-tasting dipeptide ester. Complete hydrolysis of aspartame gives phenylalanine, aspartic acid, and methanol. Mild incubation with carboxypeptidase has no effect on aspartame. Treatment of aspartame with phenyl isothiocyanate, followed by mild hydrolysis, gives the phenylthiohydantoin of aspartic acid. Propose a structure for aspartame.

Peptides often have functional groups other than free amino groups at the N terminus and other than carboxyl groups at the C terminus.

(a) A tetrapeptide is hydrolyzed by heating with 6 M, and the hydrolysate is found to contain Ala, Phe, Val, and Glu. When the hydrolysate is neutralized, the odor of ammonia is detected. Explain where this ammonia might have been incorporated in the original peptide.

(b) The tripeptide thyrotropic hormone releasing factor(TRF) has the full name pyroglutamylhistidylprolinamide. The structure appears here. Explain the functional groups at the N terminus and at the C terminus.

(c)On acidic hydrolysis, an unknown pentapeptide gives glycine, alanine, valine, leucine and isoleucine. No odor of ammonia is detected when the hydrolysate is neutralized. Reaction with phenyl isothiocyanate followed by mild hydrolysis gives nophenylthiohydantoin derivative. Incubation with carboxypeptidase has no effect. Explain these findings.

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