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Some pathogens have developed mechanisms to evade the immune system, making it difficult or impossible to develop effective vaccines against them. a. African sleeping sickness is caused by a protozoan called Trypanosoma brucei, carried by the tsetse fly. The trypanosome surface is dominated by one coat protein, the variable surface glycoprotein (VSG). The trypanosome genome encodes over 1,000 different versions of VSG. All of the cells in an initial infection feature the same VSG coat on their surfaces, and this is readily recognized as foreign by the immune system. However, an individual trypanosome in the broader population will switch and randomly begin expressing a different variant of the VSG coat. All the descendants of that cell will have the new and different protein on their surface. As the population with the second VSG coat increases, an individual cell will then switch to a third VSG protein coat, and so on. b. The human immunodeficiency virus (HIV) has an error-prone system for replicating its genome, effectively introducing mutations at an unusually high rate. Many of the mutations affect the viral protein coat. Describe how each pathogen can survive the immune response of its host.

Short Answer

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Trypanosoma brucei switches VSG proteins, while HIV mutates rapidly, both evading immune detection.

Step by step solution

01

Understanding African Sleeping Sickness

The Trypanosoma brucei protozoan relies on its variable surface glycoprotein (VSG) to evade the host's immune system. Initially, it presents a consistent VSG coat which is identified and targeted by the host's immune response. However, the protozoan can randomly switch to a different VSG variant from its genome's repertoire of over 1,000 variants. This switching ensures that the immune system, which requires time to recognize and adapt to the antigen, is always one step behind. Thus, as the immune system begins to target one VSG variant, the pathogen shifts to another, facilitating persistent infection.
02

Understanding HIV Mutation Mechanism

HIV employs a replication mechanism that is prone to errors, resulting in a high mutation rate. These mutations often occur in the genes coding for the virus's protein coat. Such frequent changes make it difficult for the host's immune system to consistently recognize and attack the virus. As the immune system begins to respond to one viral form, mutations create new variants that evade detection, allowing the virus to persist in the host despite immune pressure.
03

Comparing Adaptation Mechanisms

Both pathogens employ mechanisms to alter the proteins exposed to the host's immune system. Trypanosoma brucei switches between pre-existing protein variants in a controlled sequence, while HIV randomly generates new variants through mutation. Both methods allow these pathogens to effectively escape detection and clearance by the immune system, leading to prolonged infections.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Variable Surface Glycoprotein (VSG)
Trypanosoma brucei, the causative agent of African sleeping sickness, utilizes variable surface glycoprotein, or VSG, to outsmart the host's immune defenses. VSG are special proteins that coat the surface of the parasite, cleverly allowing it to disguise itself from the host's immune system.

Imagine each trypanosome as a chameleon of sorts, capable of changing its color—where color is the type of VSG on its surface. Each individual trypanosome can only wear one 'color' or VSG variant at a time, but it has access to a genetic palette with over 1,000 options. Initially, all foreign attacks from the host target a single prominent VSG variant. However, the trypanosome can switch to another variant, or 'color', before the immune system fully deploys its defense strategy.

This ability to change its 'coat' rapidly keeps the immune system playing catch-up, as it takes time to mount a sufficient response to each new VSG. Ultimately, this enables Trypanosoma brucei to persistently occupy the host, evading immune eradication, thus continuing to cause disease.
Mutation Mechanisms in Viruses
Viruses have developed a wide array of tactics to avoid detection and destruction by their host's immune system, and one of the most effective strategies is through frequent mutations. The mutation mechanism is particularly highlighted in the case of the Human Immunodeficiency Virus (HIV).

HIV is notorious for its high mutation rate, thanks to an error-prone reverse transcriptase enzyme, which frequently makes mistakes as it replicates the virus’s genetic material. This high mutation rate leads to a phenomenon known as "antigenic drift." As a result, new versions of the virus with slightly altered protein coats are constantly produced. This variability in viral proteins means that once the immune system has begun recognizing and producing antibodies against one form of the virus, another has already emerged with enough changes to escape detection.
  • Mutation contributes to viral persistence and complicates vaccine development.
  • It serves as a primary hurdle for effective long-term immune recognition.
By constantly evolving, HIV remains a step ahead of the host's immune system, which struggles to adapt to the ever-changing viral landscape, leading to a chronic infection.
Host-Pathogen Interaction
The interaction between host and pathogen is a dynamic battle, often referred to as an evolutionary arms race. In this ongoing conflict, both sides develop sophisticated methods either to attack or to defend. Pathogens like Trypanosoma brucei and HIV have honed their strategies to maximize survival against the host's immune responses.

For Trypanosoma brucei, the mechanism involves an ingenious form of genetic shuffling that allows it to periodically change its antigenic surface through the expression of different VSGs. This strategic adaptation means that the host immune system is continuously confronted with 'new' pathogens before it can eliminate the old ones.

In the case of HIV, the virus modifies its protein coat via mutations that occur during its replication process. These mutations are random, yet they can result in significant antigenic variations that mask the virus from targeted immune responses.
  • In both instances, the ability of the pathogen to adapt is crucial for survival and continued host infection.
  • The immune system, while adept, often finds itself a step behind, leading to prolonged infections.
This host-pathogen tango is a quintessential example of co-evolution, where both organisms continually adapt, yet it often results in persistent or recurrent infections in the host.

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Most popular questions from this chapter

The \(E\). coli nickel-binding protein binds to its ligand, \(\mathrm{Ni}^{2+}\), with a \(K_{\mathrm{d}}\) of \(100 \mathrm{~nm}\). Calculate the \(\mathrm{Ni}^{2+}\) concentration when the fraction of binding sites occupied by the ligand \((Y)\) is (a) \(0.25\), (b) \(0.6\), (c) \(0.95 .\)

Studies of oxygen transport in pregnant mammals show that the \(\mathrm{O}_{2}\) saturation curves of fetal and maternal blood are markedly different when measured under the same conditions. Fetal erythrocytes contain a structural variant of hemoglobin, HbF, consisting of two \(a\) and two \(\gamma\) subunits \(\left(\alpha_{2} \gamma_{2}\right)\), whereas maternal erythrocytes contain \(\mathrm{HbA}\left(\alpha_{2} \beta_{2}\right)\). a. Which hemoglobin has a higher affinity for oxygen under physiologic conditions? b. What is the physiological significance of the different \(\mathrm{O}_{2}\) affinities? When all the BPG is carefully removed from samples of \(\mathrm{HbA}\) and \(\mathrm{HbF}\), the measured \(\mathrm{O}_{2}\)-saturation curves (and consequently the \(\mathrm{O}_{2}\) affinities) are displaced to the left. However, HbA now has a greater affinity for oxygen than does HbF. When BPG is reintroduced, the \(\mathrm{O}_{2}\)-saturation curves return to normal, as shown in the graph. c. What is the effect of BPG on the \(\mathrm{O}_{2}\) affinity of hemoglobin? How can this information be used to explain the different \(\mathrm{O}_{2}\) affinities of fetal and maternal hemoglobin?

Which of these situations would produce a Hill plot with \(n_{\mathrm{H}}<1.0\) ? Explain your reasoning in each case. a. The protein has multiple subunits, each with a single ligand-binding site. Ligand binding to one site decreases the binding affinity of other sites for the ligand. b. The protein is a single polypeptide with two ligandbinding sites, each having a different affinity for the ligand. c. The protein is a single polypeptide with a single ligand-binding site. As purified, the protein preparation is heterogeneous, containing some protein molecules that are partially denatured and thus have a lower binding affinity for the ligand. d. The protein has multiple subunits, each with a single ligand-binding site. Ligands bind independently to each site, do not affect the binding affinity of other sites, and bind with identical affinities.

When a vertebrate dies, its muscles stiffen as they are deprived of ATP, a state called rigor mortis. Using your knowledge of the catalytic cycle of myosin in muscle contraction, explain the molecular basis of the rigor state.

To fully appreciate how proteins function in a cell, it is helpful to have a threedimensional view of how proteins interact with other cellular components. Fortunately, this is possible using online protein databases and three- dimensional molecular viewing utilities such as JSmol, a free and user- friendly molecular viewer that is compatible with most browsers and operating systems. In this exercise, examine the interactions between the enzyme lysozyme and the Fab portion of the antilysozyme antibody. Use the PDB identifier 1FDL to explore the structure of the IgG1 Fab fragment-lysozyme complex (antibody- antigen complex). To answer the questions, use the information on the Structure Summary page at the Protein Data Bank (www.rcsb.org), and view the structure using JSmol or a similar viewer. a. Which chains in the three-dimensional model correspond to the antibody fragment, and which correspond to the antigen, lysozyme? b. What type of secondary structure predominates in this Fab fragment? c. How many amino acid residues are in the heavy and light chains of the Fab fragment? In lysozyme? Estimate the percentage of the lysozyme that interacts with the antigen- binding site of the antibody fragment. d. Identify the specific amino acid residues in lysozyme and in the variable regions of the Fab heavy and light chains that are situated at the antigen- antibody interface. Are the residues contiguous in the primary sequence of the polypeptide chains?

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