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Regulation of the Pyruvate Dehydrogenase Complex In animal tissues, the ratio of active, unphosphorylated to inactive, phosphorylated PDH complex regulates the rate of conversion of pyruvate to acetyl-CoA. Determine what happens to the rate of this reaction when a preparation of rabbit muscle mitochondria containing the PDH complex is treated with (a) pyruvate dehydrogenase kinase, ATP, and \(\mathrm{NADH}\); (b) pyruvate dehydrogenase phosphatase and \(\mathrm{Ca}^{2+}\); (c) malonate.

Short Answer

Expert verified
(a) Decreases the rate; (b) Increases the rate; (c) Minor indirect decrease.

Step by step solution

01

Define Components Involved

The Pyruvate Dehydrogenase (PDH) complex is crucial for converting pyruvate into acetyl-CoA. It is regulated by phosphorylation states controlled by pyruvate dehydrogenase kinase (adds a phosphate, inactivating PDH) and pyruvate dehydrogenase phosphatase (removes a phosphate, activating PDH). NADH generally acts as an inhibitor, signaling high-energy status, while calcium ions (Ca²⁺) activate some enzymes associated with energy production. Malonate is a competitive inhibitor of succinate dehydrogenase, but here its influence is indirect, affecting reactions in the Krebs cycle that follow PDH activity.
02

Impact of Pyruvate Dehydrogenase Kinase, ATP, and NADH

When pyruvate dehydrogenase kinase, ATP, and NADH are present, the kinase becomes active. This enzyme phosphorylates and inactivates the PDH complex. NADH, as a product of metabolism, also signals sufficient energy supply, further promoting kinase activity. This condition decreases the conversion rate of pyruvate to acetyl-CoA.
03

Impact of Pyruvate Dehydrogenase Phosphatase and Ca²⁺

Adding pyruvate dehydrogenase phosphatase and Ca²⁺ activates the PDH complex by removing the phosphate groups. Ca²⁺ further stimulates phosphatase activity, as it often indicates muscle work and energy demand. Consequently, this treatment increases the conversion rate of pyruvate to acetyl-CoA.
04

Impact of Malonate

Malonate inhibits the succinate dehydrogenase step in the Krebs cycle. While this does not directly interact with the PDH complex, it can lead to accumulation of citrate and other intermediates, potentially signaling through feedback inhibition to slow down the PDH complex indirectly. However, this inhibition is often minor relative to direct enzymatic regulation.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Phosphorylation and Dephosphorylation
The regulation of the Pyruvate Dehydrogenase (PDH) complex is a classic example of how phosphorylation and dephosphorylation control metabolic processes. The PDH complex plays a vital role in converting pyruvate, derived from glucose, into acetyl-CoA, which then enters the Krebs cycle to produce energy.

- **Phosphorylation** of PDH occurs through the action of pyruvate dehydrogenase kinase. This enzyme adds phosphate groups to PDH, causing it to become inactive. This process typically happens when the cell has enough energy, indicated by the presence of ATP and NADH. Thus, the cell avoids unnecessary energy production.
- **Dephosphorylation** is carried out by pyruvate dehydrogenase phosphatase, which removes phosphate groups, subsequently activating the PDH complex. This is often influenced by the presence of calcium ions, suggesting energy demand such as muscle movement.
Understanding this balance is key in biochemistry, as it illustrates how cells regulate energy production to meet varying demands.
Metabolic Pathways
Metabolic pathways are like a map of interconnected biochemical processes inside cells, crucial for energy production and utilization. The Pyruvate Dehydrogenase (PDH) complex is an important component within these pathways, acting as a bridge between glycolysis and the Krebs cycle.

- **Glycolysis** breaks down glucose into pyruvate in the cytoplasm, which then travels to the mitochondria.
- **PDH complex** converts this pyruvate into acetyl-CoA, a crucial step before the pyruvate can enter the Krebs cycle for further energy extraction.
- **Feedback Mechanisms** come into play when molecules like malonate enter. Although malonate primarily inhibits succinate dehydrogenase in the Krebs cycle, it can indirectly affect the PDH complex through feedback inhibition if pathways are altered due to accumulation of certain intermediates.
By understanding these pathways, students can appreciate how interconnected cellular processes are and how a change in one area can ripple through the entire system.
Biochemistry Education
To grasp the significance of these concepts, educating oneself in biochemistry can demystify how life operates on a molecular level. A well-rounded biochemistry education introduces students to foundational concepts such as enzyme regulation, metabolic pathways, and cellular energetics.

- **Phosphorylation/Dephosphorylation Concepts** help students understand how cells switch processes on and off. This knowledge is crucial for fields such as medicine and pharmacology.
- **Metabolic Pathway Analysis** enhances insights into how cells process nutrients to energy, knowledge applicable in understanding metabolic diseases and developing therapeutic strategies.
Studying these processes not only answers questions about how cells function but also provides a comprehensive view of the biochemical foundation of life. It is important to approach biochemistry with curiosity, as it can unveil fascinating insights into cellular machinery and life's complexity.

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Most popular questions from this chapter

Energy Yield from the Citric Acid Cycle The reaction catalyzed by succinyl-CoA synthetase produces the highenergy compound GTP. How is the free energy contained in GTP incorporated into the cellular ATP pool?

Pyruvate Dehydrogenase Cofactors and Mechanism Describe the role of each cofactor involved in the reaction catalyzed by the pyruvate dehydrogenase complex.

Thiamine Deficiency Individuals with a thiamine-deficient diet have relatively high levels of pyruvate in their blood. Explain this in biochemical terms.

How the Citric Acid Cycle Was Discovered The detailed biochemistry of the citric acid cycle was determined by several researchers over a period of decades. In a 1937 article, Krebs and Johnson summarized their work and the work of others in the first published description of this pathway. The methods used by these researchers were very different from those of modern biochemistry. Radioactive tracers were not commonly available until the 1940 s, so Krebs and other researchers had to use nontracer techniques to work out the pathway. Using freshly prepared samples of pigeon breast muscle, they determined oxygen consumption by suspending minced muscle in buffer in a sealed flask and measuring the volume (in \(\mu \mathrm{L}\) ) of oxygen consumed under different conditions. They measured levels of substrates (intermediates) by treating samples with acid to remove contaminating proteins, then assaying the quantities of various small organic molecules. The two key observations that led Krebs and colleagues to propose a citric acid cycle as opposed to a linear pathway (like that of glycolysis) were made in the following experiments. Experiment I: They incubated \(460 \mathrm{mg}\) of minced muscle in 3 \(\mathrm{mL}\) of buffer at \(40^{\circ} \mathrm{C}\) for 150 minutes. Addition of citrate increased \(\mathrm{O}_{2}\) consumption by \(893 \mu \mathrm{L}\) compared with samples without added citrate. They calculated, based on the \(\mathrm{O}_{2}\) consumed during respiration of other carbon-containing compounds, that the expected \(\mathrm{O}_{2}\) consumption for complete respiration of this quantity of citrate was only \(302 \mu \mathrm{L}\). Experiment II: They measured \(\mathrm{O}_{2}\) consumption by \(460 \mathrm{mg}\) of minced muscle in \(3 \mathrm{~mL}\) of buffer when incubated with citrate and/or with 1-phosphoglycerol (glycerol 1-phosphate; this was known to be readily oxidized by cellular respiration) at \(40^{\circ} \mathrm{C}\) for 140 minutes. The results are shown in the table. \begin{tabular}{llc} 1 & No extra & 342 \\ \hline 2 & \(0.3 \mathrm{~mL} 0.2 \mathrm{M}\) 1-phosphoglycerol & 757 \\ \hline 3 & \(0.15 \mathrm{~mL} 0.02 \mathrm{M}\) citrate & 431 \\ \hline 4 & \(0.3 \mathrm{~mL} 0.2 \mathrm{M}\) 1-phosphoglycerol and \(0.15 \mathrm{~mL} 0.02\) & 1,385 \\ & M citrate & \\ \hline \end{tabular} a. Why is \(\mathrm{O}_{2}\) consumption a good measure of cellular respiration? b. Why does sample 1 (unsupplemented muscle tissue) consume some oxygen? c. Based on the results for samples 2 and 3 , can you conclude that 1-phosphoglycerol and citrate serve as substrates for cellular respiration in this system? Explain your reasoning. d. Krebs and colleagues used the results from these experiments to argue that citrate was "catalytic"that it helped the muscle tissue samples metabolize 1 phosphoglycerol more completely. How would you use their data to make this argument? e. Krebs and colleagues further argued that citrate was not simply consumed by these reactions, but had to be regenerated. Therefore, the reactions had to be a cycle rather than a linear pathway. How would you make this argument? Other researchers had found that arsenate \(\left(\mathrm{AsO}_{4}^{3-}\right)\) inhibits \(a\)-ketoglutarate dehydrogenase and that malonate inhibits succinate dehydrogenase. f. Krebs and coworkers found that muscle tissue samples treated with arsenate and citrate would consume citrate only in the presence of oxygen; under these conditions, oxygen was consumed. Based on the pathway in Figure 16-7, what was the citrate converted to in this experiment, and why did the samples consume oxygen? In their article, Krebs and Johnson further reported the following: (1) In the presence of arsenate, \(5.48\) mmol of citrate was converted to \(5.07 \mathrm{mmol}\) of \(a\) ketoglutarate. (2) In the presence of malonate, citrate was quantitatively converted to large amounts of succinate and small amounts of \(a\)-ketoglutarate. (3) Addition of oxaloacetate in the absence of oxygen led to production of a large amount of citrate; the amount was increased if glucose was also added. Other workers had found the following pathway in similar muscle tissue preparations: Succinate \(\rightarrow\) fumarate \(\rightarrow\) malate \(\rightarrow\) oxaloacetate \(\longrightarrow \mathrm{p}\) g. Based only on the data presented in this problem, what is the order of the intermediates in the citric acid cycle? How does this compare with Figure 16-7? Explain your reasoning.

Regulation of Pyruvate Carboxylase The carboxylation of pyruvate by pyruvate carboxylase occurs at a very low rate unless acetyl-CoA, a positive allosteric modulator, is present. If you have just eaten a meal rich in fatty acids (triacylglycerols) but low in carbohydrates (glucose), how does this regulatory property shut down the oxidation of glucose to \(\mathrm{CO}_{2}\) and \(\mathrm{H}_{2} \mathrm{O}\) but increase the oxidation of acetylCoA derived from fatty acids?

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