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Respiration Studies in Isolated Mitochondria Cellular respiration can be studied in isolated mitochondria by measuring oxygen consumption under different conditions. If \(0.01 \mathrm{~m}\) sodium malonate is added to actively respiring mitochondria that are using pyruvate as fuel, respiration soon stops and a metabolic intermediate accumulates. a. What is the structure of this intermediate? b. Explain why it accumulates. c. Explain why oxygen consumption stops. d. Aside from removal of the malonate, what can overcome this inhibition of respiration? Explain.

Short Answer

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a) The intermediate is succinate. b) Malonate inhibits succinate dehydrogenase. c) Oxygen consumption stops due to impaired electron flow in the ETC. d) Addition of succinate can bypass the inhibition.

Step by step solution

01

Identify the metabolic pathway involved

The mitochondria are actively respiring using pyruvate as a fuel source. Pyruvate enters the TCA (tricarboxylic acid) cycle. The TCA cycle is essential for cellular respiration, where pyruvate is converted to acetyl-CoA and enters the cycle. Key enzymes in this cycle include succinate dehydrogenase.
02

Understand malonate's role

Sodium malonate is a competitive inhibitor of the enzyme succinate dehydrogenase in the TCA cycle. It is structurally similar to succinate and competes for the active site on succinate dehydrogenase, preventing the conversion of succinate to fumarate.
03

Determine the accumulating intermediate

When succinate dehydrogenase is inhibited by malonate, the metabolic intermediate succinate will accumulate because it cannot be converted to fumarate. The structure of succinate is derived from its chemical formula: \( ext{C}_4 ext{H}_6 ext{O}_4 \) (a four-carbon dicarboxylic acid).
04

Explain why oxygen consumption stops

Oxygen consumption in mitochondria is tightly linked to the electron transport chain (ETC), which receives electrons from NADH and FADH2 produced in the TCA cycle. When succinate dehydrogenase is inhibited, electron flow decreases, reducing the ETC and subsequently decreasing oxygen consumption necessary for ATP production.
05

Consider overcoming respiratory inhibition without removing malonate

One way to overcome the inhibition caused by malonate is to provide an alternative substrate for the electron transport chain, such as succinate itself, which can bypass the blocked step by entering the ETC directly through complex II, mediating electron transfer to ubiquinone.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

TCA Cycle
The TCA cycle, also known as the tricarboxylic acid cycle or the Krebs cycle, is a central metabolic pathway crucial for cellular respiration. It takes place in the mitochondria, where pyruvate, derived from glucose via glycolysis, is transformed into acetyl-CoA. This acetyl-CoA is the entry molecule into the TCA cycle. The cycle is a series of enzymatic reactions that produce energy-storing molecules such as NADH, FADH2, and GTP. These molecules carry high-energy electrons to the electron transport chain, which we'll discuss later. Characteristics of the TCA cycle include:
  • Cyclic nature: It regenerates oxaloacetate, which combines with acetyl-CoA to continue the cycle.
  • Production of key intermediates: An essential repository for intermediate metabolites used in other biochemical processes like amino acid synthesis.
  • Complete oxidation of acetyl-CoA: Leads to the release of carbon dioxide and energy extraction.
The cycle also involves important enzymes such as citrate synthase and succinate dehydrogenase. Disturbances in the TCA cycle, such as inhibition of certain enzymes, can profoundly affect cellular respiration and energy production.
Succinate Dehydrogenase
Succinate dehydrogenase plays a critical role in both the TCA cycle and the electron transport chain (ETC), making it a unique enzyme. It catalyzes the oxidation of succinate to fumarate, and unlike most other TCA cycle enzymes, succinate dehydrogenase is embedded in the inner mitochondrial membrane as part of the ETC (Complex II). Key aspects of succinate dehydrogenase include:
  • Dual functionality: Operates as a part of both the TCA cycle and ETC, linking the two processes.
  • Electron carrier: Assists in transferring electrons to the ETC, aiding in the generation of a proton gradient used for ATP synthesis.
Sodium malonate acts as a competitive inhibitor to this enzyme. It resembles succinate enough to compete for the enzyme's active site, thus preventing succinate from binding and being converted to fumarate. This inhibition leads to the accumulation of succinate, as it cannot proceed further in the cycle, thus showing its pivotal position in energy metabolism.
Electron Transport Chain
The electron transport chain (ETC) is the final stage of cellular respiration. This complex series of reactions is responsible for producing the majority of ATP during cellular respiration by utilizing high-energy electrons from NADH and FADH2. Electron transport occurs across the inner mitochondrial membrane, where the ETC is located. The main points of the ETC include:
  • Electron donors: NADH and FADH2 donate electrons, previously captured during glycolysis and the TCA cycle.
  • Proton gradient: As electrons move through complexes I-IV, protons are pumped across the membrane, creating a gradient.
  • ATP synthesis: The proton gradient drives ATP synthase to generate ATP in a process called oxidative phosphorylation.
Inhibition in the TCA cycle, such as blocking succinate dehydrogenase, reduces the flow of electrons to the ETC. Consequently, a decrease in electron flow leads to reduced proton pumping, stalled gradient formation, and ultimately lower ATP production, demonstrating the interdependence of these metabolic pathways.
Metabolic Pathway Inhibition
Metabolic pathway inhibition involves halting the specific steps in a metabolic pathway, often leading to accumulation of upstream substrates, reduced downstream products, and an overall halt in a process such as cellular respiration. Here's how it happens and its implications:
  • Enzyme Inhibition: Often caused by compounds that mimic natural substrates (like sodium malonate inhibiting succinate dehydrogenase), blocking enzyme activity.
  • Substrate Accumulation: When an enzyme is inhibited, its substrates cannot be converted into products, leading to their accumulation. In our case, succinate accumulates.
  • Energy Production Block: Especially in cellular respiration, inhibition can lead to impeding energy production steps, as seen with oxygen consumption stopping when the ETC has insufficient input.
By providing an alternative substrate, such as succinate, the inhibition due to malonate can be bypassed, allowing partial restoration of the blocked pathway. This illustrates the potential medical and biochemical applications of understanding pathway inhibition.

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Most popular questions from this chapter

Regulation of the Pyruvate Dehydrogenase Complex In animal tissues, the ratio of active, unphosphorylated to inactive, phosphorylated PDH complex regulates the rate of conversion of pyruvate to acetyl-CoA. Determine what happens to the rate of this reaction when a preparation of rabbit muscle mitochondria containing the PDH complex is treated with (a) pyruvate dehydrogenase kinase, ATP, and \(\mathrm{NADH}\); (b) pyruvate dehydrogenase phosphatase and \(\mathrm{Ca}^{2+}\); (c) malonate.

Oxaloacetate Pool What factors might decrease the pool of oxaloacetate available for the activity of the citric acid cycle? How can the pool of oxaloacetate be replenished?

Thiamine Deficiency Individuals with a thiamine-deficient diet have relatively high levels of pyruvate in their blood. Explain this in biochemical terms.

Relationship between Respiration and the Citric Acid Cycle Although oxygen does not participate directly in the citric acid cycle, the cycle operates only when \(\mathrm{O}_{2}\) is present. Why?

How the Citric Acid Cycle Was Discovered The detailed biochemistry of the citric acid cycle was determined by several researchers over a period of decades. In a 1937 article, Krebs and Johnson summarized their work and the work of others in the first published description of this pathway. The methods used by these researchers were very different from those of modern biochemistry. Radioactive tracers were not commonly available until the 1940 s, so Krebs and other researchers had to use nontracer techniques to work out the pathway. Using freshly prepared samples of pigeon breast muscle, they determined oxygen consumption by suspending minced muscle in buffer in a sealed flask and measuring the volume (in \(\mu \mathrm{L}\) ) of oxygen consumed under different conditions. They measured levels of substrates (intermediates) by treating samples with acid to remove contaminating proteins, then assaying the quantities of various small organic molecules. The two key observations that led Krebs and colleagues to propose a citric acid cycle as opposed to a linear pathway (like that of glycolysis) were made in the following experiments. Experiment I: They incubated \(460 \mathrm{mg}\) of minced muscle in 3 \(\mathrm{mL}\) of buffer at \(40^{\circ} \mathrm{C}\) for 150 minutes. Addition of citrate increased \(\mathrm{O}_{2}\) consumption by \(893 \mu \mathrm{L}\) compared with samples without added citrate. They calculated, based on the \(\mathrm{O}_{2}\) consumed during respiration of other carbon-containing compounds, that the expected \(\mathrm{O}_{2}\) consumption for complete respiration of this quantity of citrate was only \(302 \mu \mathrm{L}\). Experiment II: They measured \(\mathrm{O}_{2}\) consumption by \(460 \mathrm{mg}\) of minced muscle in \(3 \mathrm{~mL}\) of buffer when incubated with citrate and/or with 1-phosphoglycerol (glycerol 1-phosphate; this was known to be readily oxidized by cellular respiration) at \(40^{\circ} \mathrm{C}\) for 140 minutes. The results are shown in the table. \begin{tabular}{llc} 1 & No extra & 342 \\ \hline 2 & \(0.3 \mathrm{~mL} 0.2 \mathrm{M}\) 1-phosphoglycerol & 757 \\ \hline 3 & \(0.15 \mathrm{~mL} 0.02 \mathrm{M}\) citrate & 431 \\ \hline 4 & \(0.3 \mathrm{~mL} 0.2 \mathrm{M}\) 1-phosphoglycerol and \(0.15 \mathrm{~mL} 0.02\) & 1,385 \\ & M citrate & \\ \hline \end{tabular} a. Why is \(\mathrm{O}_{2}\) consumption a good measure of cellular respiration? b. Why does sample 1 (unsupplemented muscle tissue) consume some oxygen? c. Based on the results for samples 2 and 3 , can you conclude that 1-phosphoglycerol and citrate serve as substrates for cellular respiration in this system? Explain your reasoning. d. Krebs and colleagues used the results from these experiments to argue that citrate was "catalytic"that it helped the muscle tissue samples metabolize 1 phosphoglycerol more completely. How would you use their data to make this argument? e. Krebs and colleagues further argued that citrate was not simply consumed by these reactions, but had to be regenerated. Therefore, the reactions had to be a cycle rather than a linear pathway. How would you make this argument? Other researchers had found that arsenate \(\left(\mathrm{AsO}_{4}^{3-}\right)\) inhibits \(a\)-ketoglutarate dehydrogenase and that malonate inhibits succinate dehydrogenase. f. Krebs and coworkers found that muscle tissue samples treated with arsenate and citrate would consume citrate only in the presence of oxygen; under these conditions, oxygen was consumed. Based on the pathway in Figure 16-7, what was the citrate converted to in this experiment, and why did the samples consume oxygen? In their article, Krebs and Johnson further reported the following: (1) In the presence of arsenate, \(5.48\) mmol of citrate was converted to \(5.07 \mathrm{mmol}\) of \(a\) ketoglutarate. (2) In the presence of malonate, citrate was quantitatively converted to large amounts of succinate and small amounts of \(a\)-ketoglutarate. (3) Addition of oxaloacetate in the absence of oxygen led to production of a large amount of citrate; the amount was increased if glucose was also added. Other workers had found the following pathway in similar muscle tissue preparations: Succinate \(\rightarrow\) fumarate \(\rightarrow\) malate \(\rightarrow\) oxaloacetate \(\longrightarrow \mathrm{p}\) g. Based only on the data presented in this problem, what is the order of the intermediates in the citric acid cycle? How does this compare with Figure 16-7? Explain your reasoning.

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