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Explain how an antibody could be useful for purifying a protein and for determining its concentration.

Short Answer

Expert verified

The proteins bind to antibodies at sites other than the antigen binding domain, an immobilized form of the proteins is used in purification. It involves selective enrichment or specific isolation of antibodies from serum. Protein concentration can be estimated by measuring the UV absorbance at 280nm; a strong peak shows here due to Tryptophan or Tyrosine residues. This can be readily converted into protein concentration using the Beer-Lambert law.

Step by step solution

01

Physiochemical fractionation

A separation process in which a certain quantity of a mixture like gas, solid, liquid, or enzymes is divided during a phase transition into several tiny fractions in which the composition differs according to a gradient.

02

Class-specific affinity

This type of affinity allows for purifying a selected class of immunoglobulin and discarding the unwanted types. A particular antibody called IgG binds to solid-phase by immobilized biological ligands (proteins, lectins, etc.)

03

Antigen-specific affinity

This is based on affinity purification in which antibodies in a sample bind to a particular antigen molecule through their specific antigen-binding domain. It purifies all antibodies that bind to the antigen without considering antibody class or isotypes.

04

Beer-Lambert law

It states that there is a linear relationship between the concentration and the absorbance of the suspension.

A = ɛcl

Where,

A = absorbance

ɛ = molar absorptivity

c = concentration

l = length of the light path

Hence, antibody can be used to purify proteins.

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Most popular questions from this chapter

What fractionation procedure could be used to purify protein 1 from a mixture of three proteins whose amino acid compositions are as follows?

1. 25% Ala, 20% Gly, 20% Ser, 10% Ile, 10% Val, 5% Asn, 5% Gln, 5% Pro

2. 30% Gln, 25% Glu, 20% Lys, 15% Ser, 10% Cys

3. 25% Asn, 20% Gly, 20% Asp, 20% Ser, 10% Lys, 5% Tyr

All three proteins are similar in size and pI, and there is no antibody available for protein 1.

Explain why a certain protein has an apparent molecular mass of 90kDwhen determined by gel filtration and 60kDwhen determined by SDS-PAGE in the presence or absence of 2-mercaptoethanol. Which molecular mass determination is more accurate?

(a) The ESI-MS spectrum below was obtained for hen egg-white lysozyme (HEWL). Using peaks 5 and 6, calculate the molecular mass of HEWL (see Sample Calculation 5-1).

[http://www.astbury.leeds.ac.uk/facil/MStut/mstutorial.htm. Published by A.E. Ashcroft, Astbury Centre for Structural Molecular Biology, University of Leeds (2000)]

(b) What is the charge on the ion that makes peak 5?

Treatment of a polypeptide with 2-mercaptoethanol yields two polypeptides:

1. Ala–Val–Cys–Arg–Thr–Gly–Cys–Lys–Asn–Phe–Leu

2. Tyr–Lys–Cys–Phe–Arg–His–Thr–Lys–Cys–Ser

Treatment of the intact polypeptide with trypsin yields fragments with the following amino acid compositions:

3. (Ala, Arg, Cys2, Ser, Val)

4. (Arg, Cys2, Gly, Lys, Thr, Phe)

5. (Asn, Leu, Phe)

6. (His, Lys, Thr)

7. (Lys, Tyr)

Indicate the positions of the disulfide bonds in the intact polypeptide.

Electrospray ionization mass spectrometry (ESI-MS) of proteins involves creating positively charged ions of the protein and separating them according to their mass-to-charge ratio (m/z).

(a) What causes the different positive charges on different particles of the protein?

(b) The amino acid composition (in numbers of residues per chain) of hen egg-white lysozyme (HEWL) is as follows:

P 2 Y 3 N 14 H 1

D 7 M 2 L 8 E 2

C 8 R 11 G 12 F 3

A 12 I 6 K 6 V 6

S 10 W 6 T 7 Q 3

What is the maximum positive charge that can be present on a HEWL ion?

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