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Electrospray ionization mass spectrometry (ESI-MS) of proteins involves creating positively charged ions of the protein and separating them according to their mass-to-charge ratio (m/z).

(a) What causes the different positive charges on different particles of the protein?

(b) The amino acid composition (in numbers of residues per chain) of hen egg-white lysozyme (HEWL) is as follows:

P 2 Y 3 N 14 H 1

D 7 M 2 L 8 E 2

C 8 R 11 G 12 F 3

A 12 I 6 K 6 V 6

S 10 W 6 T 7 Q 3

What is the maximum positive charge that can be present on a HEWL ion?

Short Answer

Expert verified
  1. The positive charges are due to the protonation of basic side chains of histidine, lysine, and arginine due to the N-terminal amine group of the protein.
  2. The maximum positive charge which can be present on HEWL ion is 19.

Step by step solution

01

Electrospray Ionization – Mass Spectrometry (ESI - MS)

Mass Spectroscopy is the technique used for characterising and sequencing proteins. For ions in the gas phase, mass spectrometry precisely detects the mass-to-charge (m/z) ratio (where m is the ion's mass and z is its charge).In Electrospray Ionization – Mass Spectrometry (ESI - MS), a solution of a macromolecule like a peptide is sprayed from a tiny capillary tube maintained at high voltage (4,000 V), generating fine, highly charged droplets from which the solvent quickly evaporates. This produces a sequence of macromolecular ions in the gas phase with ionic charges ranging from +0.5 to +2 per kilodalton.

02

Explanation

The positive charges on different particles during ESI - MS is because of the protonation of basic side chains of amino acids i.e., Histidine, arginine, and lysine. The positive charge is also because of the protonation of N-terminal amine group of the protein chain.

The HEWL ion contains one histidine, 6 lysine, and 11 arginine residues. Also, the N-terminus contains one NH2, so the maximum positive charge which can be present on it is 19.

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Most popular questions from this chapter

It has been hypothesized that early life-forms used only eight different amino acids to build small peptides. How many different 10-residue peptides could be constructed from eight amino acids?

Explain how the number of amino acid differences between homologous proteins can be used to construct a phylogenetic tree.

You must cleave the following peptide into smaller fragments. Which of the proteases listed in Table 5-4 would be likely to yield the most fragments? The fewest?

NMTQGRCKPVNTFVHEPLVDVQNVCFKE

Electrospray ionization mass spectrometry (ESI-MS) of proteins involves creating positively charged ions of the protein and separating them according to their mass-to-charge ratio (m/z).

(a) What causes the different positive charges on different particles of the protein?

(b) The amino acid composition (in numbers of residues per chain) of hen egg-white lysozyme (HEWL) is as follows:

P 2 Y 3 N 14 H 1

D 7 M 2 L 8 E 2

C 8 R 11 G 12 F 3

A 12 I 6 K 6 V 6

S 10 W 6 T 7 Q 3

What is the maximum positive charge that can be present on a HEWL ion?

Question: Purification tables are often used to keep track of the yield and purification of a protein. The specific activity is a ratio of the amount of the protein of interest, in this case Mb, obtained at a given step (μmol or enzyme units) divided by the amount (mg) of total protein. The yield is the ratio of the amount of the protein of interest obtained at a given step (μmol or enzyme units) divided by the original amount present in the crude extract, often converted to percent yield by multiplying by 100. The fold purification is the ratio of the specific activity of the purified protein to that of the crude preparation.

(a) For the purification table below, calculate the specific activity, % yield, and fold purification for the empty cells.

(b) Which step—DEAE or affinity chromatography—causes the greatest loss of Mb?

(c) Which step causes the greater purification of Mb?

(d) If you wanted to use only one purification step, which technique would you choose?

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