Chapter 11: Problem 6
Describe the structure of lampbrush chromosomes. Where are they located?
Chapter 11: Problem 6
Describe the structure of lampbrush chromosomes. Where are they located?
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Get started for freeThe human genome contains approximately \(10^{6}\) copies of an \(A l u\) sequence, one of the best-studied classes of short interspersed elements (SINEs), per haploid genome. Individual Alus share a 282-nucleotide consensus sequence followed by a 3'-adeninerich tail region (Schmid, 1998. Nucl. Acids Res. 26: 4541-4550). Given that there are approximately \(3 \times 10^{9}\) bp per human haploid genome, about how many base pairs are spaced between each Alu sequence?
In an article entitled "Nucleosome Positioning at the Replication Fork," Lucchini and others (2002. EMBOJ. 20: 7294-7302) state, "both the 'old' randomly segregated nucleosomes as well as the 'new' assembled histone octamers rapidly position themselves (within seconds) on the newly replicated DNA strands." Given this statement, how would one compare the distribution of nucleosomes and DNA in newly replicated chromatin? How could one experimentally test the distribution of nucleosomes on newly replicated chromosomes?
In instances in the eukaryotic genome, DNA sequences represent evolutionary vestiges of duplicated copies of genes. What are such regions called and what are their characteristics?
While much remains to be learned about the role of nucleosomes and chromatin structure and function, recent research indicates that in vivo chemical modification of histones is associated with changes in gene activity. For example, Bernstein and others (2000. Proc. Natl. Acad. Sci. USA 97: 5340-5345) determined that acetylation of \(\mathrm{H} 3\) and \(\mathrm{H} 4\) is associated with 21.1 percent and 13.8 percent increase in yeast gene activity, respectively, and that yeast heterochromatin is hypomethylated relative to the genome average. Speculate on the significance of these findings in terms of nucleosome- -DNA interactions and gene activity.
Mammals contain a diploid genome consisting of at least \(10^{9}\) bp. If this amount of DNA is present as chromatin fibers, where each group of 200 bp of DNA is combined with 9 histones into a nucleosome and each group of 6 nucleosomes is combined into a solenoid, achieving a final packing ratio of \(50,\) determine (a) the total number of nucleosomes in all fibers, (b) the total number of histone molecules combined with DNA in the diploid genome, and (c) the combined length of all fibers.
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