Electrophoresis is an extremely useful procedure when applied to analysis of
nucleic acids as it can resolve molecules of different sizes with relative
ease and accuracy. Large molecules migrate more slowly than small molecules in
agarose gels. However, the fact that nucleic acids of the same length may
exist in a variety of conformations can often complicate the interpretation of
electrophoretic separations. For instance, when a single species of a
bacterial plasmid is isolated from cells, the individual plasmids may exist in
three forms (depending on the genotype of their host and conditions of
isolation): superhelical/supercoiled (form I), nicked/ open circle (form II),
and linear (form III). Form I is compact and very tightly coiled, with both
DNA strands continuous. Form II exists as a loose circle because one of the
two DNA strands has
been broken, thus releasing the supercoil. All three have the same mass, but
each will migrate at a different rate through a gel. Based on your
understanding of gel composition and DNA migration, predict the relative rates
of migration of the three DNA structures
mentioned above.