Chapter 13: Problem 4
The mRNA formed from the repeating tetranucleotide UUAC incorporates only three amino acids, but the use of UAUC incorporates four amino acids. Why?
Chapter 13: Problem 4
The mRNA formed from the repeating tetranucleotide UUAC incorporates only three amino acids, but the use of UAUC incorporates four amino acids. Why?
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Get started for freeM. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (XL \(\alpha\) s, ALEX). Following is the DNA sequence of the exon's \(5^{\prime}\) end derived from a rat. The lowercase letters represent the initial coding portion for the XL \(\alpha\)s protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the noncoding, nontemplate strand of the DNA segment.) \(5^{\prime}-\) gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG (a) Convert the noncoding DNA sequence to the coding RNA sequence. (b) Locate the initiator codon within the XL \(\alpha\) segment. (c) Locate the initiator codon within the ALEX segment. Are the two initiator codons in frame? (d) Provide the amino acid sequence for each coding sequence. In the region of overlap, are the two amino acid sequences the same? (e) Are there any evolutionary advantages to having the same DNA sequence code for two protein products? Are there any disadvantages?
Sydney Brenner argued that the code was nonoverlapping because he considered that coding restrictions would occur if it were overlapping. A second major argument against an overlapping code involved the effect of a single nucleotide change. In an overlapping code, how many adjacent amino acids would be affected by a point mutation? In a nonoverlapping code, how many amino acid(s) would be affected?
The concept of consensus sequences of DNA was defined in this chapter as sequences that are similar (homologous) in different genes of the same organism or in genes of different organisms. Examples were the Pribnow box and the -35 region in prokaryotes and the TATA-box region in eukaryotes. One study found that among 73 isolates from the virus HIV-Type \(1 \mathrm{C}\) (a major contributor to the AIDS epidemic), a GGGNNNNNCC consensus sequence exists (where \(\mathrm{N}\) equals any nitrogenous base) in the promoter-enhancer region of the \(\mathrm{NF}-\kappa \mathrm{B}\) transcription factor, a cis- acting element that is critical for initiating HIV transcription in human macrophages (Novitsky et al., 2002 ). The authors contend that finding this and other conserved sequences may be of value in designing an AIDS vaccine. What advantages would knowing these consensus sequences confer? Are there disadvantages as a vaccine is designed?
Describe the structure of RNA polymerase in bacteria. What is the core enzyme? What is the role of the \(\sigma\) subunit?
Review the Chapter Concepts list on \(\mathrm{p} .342 .\) These all center around how genetic information is stored in DNA and transferred to RNA prior to translation into proteins. Write a short essay that summarizes the key properties of the genetic code and the process by which \(\mathrm{RNA}\) is transcribed on a DNA template.
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