Chapter 13: Problem 20
Write a paragraph describing the abbreviated chemical reactions that summarize RNA polymerase-directed transcription.
Chapter 13: Problem 20
Write a paragraph describing the abbreviated chemical reactions that summarize RNA polymerase-directed transcription.
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Get started for freeM. Klemke et al. (2001) discovered an interesting coding phenomenon in which an exon within a neurologic hormone receptor gene in mammals appears to produce two different protein entities (XL \(\alpha\) s, ALEX). Following is the DNA sequence of the exon's \(5^{\prime}\) end derived from a rat. The lowercase letters represent the initial coding portion for the XL \(\alpha\)s protein, and the uppercase letters indicate the portion where the ALEX entity is initiated. (For simplicity, and to correspond with the RNA coding dictionary, it is customary to represent the noncoding, nontemplate strand of the DNA segment.) \(5^{\prime}-\) gtcccaaccatgcccaccgatcttccgcctgcttctgaagATGCGGGCCCAG (a) Convert the noncoding DNA sequence to the coding RNA sequence. (b) Locate the initiator codon within the XL \(\alpha\) segment. (c) Locate the initiator codon within the ALEX segment. Are the two initiator codons in frame? (d) Provide the amino acid sequence for each coding sequence. In the region of overlap, are the two amino acid sequences the same? (e) Are there any evolutionary advantages to having the same DNA sequence code for two protein products? Are there any disadvantages?
Review the Chapter Concepts list on \(\mathrm{p} .342 .\) These all center around how genetic information is stored in DNA and transferred to RNA prior to translation into proteins. Write a short essay that summarizes the key properties of the genetic code and the process by which \(\mathrm{RNA}\) is transcribed on a DNA template.
What was the initial evidence for the existence of mRNA?
It has been suggested that the present-day triplet genetic code evolved from a doublet code when there were fewer amino acids available for primitive protein synthesis. (a) Can you find any support for the doublet code notion in the existing coding dictionary? (b) The amino acids Ala, Val, Gly, Asp, and Glu are all early members of biosynthetic pathways (Taylor and Coates, 1989 ) and are more evolutionarily conserved than other amino acids (Brooks and Fresco, 2003 ). They therefore probably represent "early" amino acids. Of what significance is this information in terms of the evolution of the genetic code? Also, which base, of the first two, would likely have been the more significant in originally specifying these amino acids? (c) As determined by comparisons of ancient and recently evolved proteins, cysteine, tyrosine, and phenylalanine appear to be late-arriving amino acids. In addition, they are considered to have been absent in the abiotic earth (Miller, 1987 ). All three of these amino acids have only two codons each, while many others, earlier in origin, have more. Is this mere coincidence, or might there be some underlying explanation?
Recent observations indicate that alternative splicing is a common way for eukaryotes to expand their repertoire of gene functions. Studies indicate that approximately 50 percent of human genes exhibit alternative splicing and approximately 15 percent of disease-causing mutations involve aberrant alternative splicing. Different tissues show remarkably different frequencies of alternative splicing, with the brain accounting for approximately 18 percent of such events (Xu et al., 2002 . Nuc. Acids Res. \(30: 3754-3766\) ). (a) Define alternative splicing and speculate on the evolutionary strategy alternative splicing offers to organisms. (b) Why might some tissues engage in more alternative splicing than others?
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