Chapter 12: Problem 6
Describe the structure of lampbrush chromosomes. Where are they located?
Chapter 12: Problem 6
Describe the structure of lampbrush chromosomes. Where are they located?
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Get started for freeA number of recent studies have determined that disease pathogenesis, whether it be related to viruses, cancer, aging, or a host of other causes, is often associated with specific changes in DNA methylation. If such patterns are to be considered as biomarkers for disease diagnosis what requisite criteria would you consider essential to their use?
The human genome contains approximately \(10^{6}\) copies of an Alu sequence, one of the best-studied classes of short interspersed elements (SINEs), per haploid genome. Individual Alu units share a 282 -nucleotide consensus sequence followed by a \(3^{\prime}\)-adenine-rich tail region (Schmid, 1998 ). Given that there are approximately \(3 \times 10^{9}\) base pairs per human haploid genome, about how many base pairs are spaced between each Alu sequence?
A particular variant of the lambda bacteriophage has a DNA double-stranded genome of 51,365 base pairs. How long would this DNA be?
While much remains to be learned about the role of nucleosomes and chromatin structure and function, recent research indicates that in vivo chemical modification of histones is associated with changes in gene activity. One study determined that acetylation of \(\mathrm{H} 3\) and \(\mathrm{H} 4\) is associated with 21.1 percent and 13.8 percent increases in yeast gene activity, respectively, and that yeast heterochromatin is hypomethylated relative to the genome average (Bernstein et al, 2000 ). Speculate on the significance of these findings in terms of nucleosome-DNA interactions and gene activity.
In this chapter, we focused on how DNA is organized at the chromosomal level. Along the way, we found many opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter, what answers would you propose to the following fundamental questions: (a) How do we know that viral and bacterial chromosomes most often consist of circular DNA molecules devoid of protein? (b) What is the experimental basis for concluding that puffs in polytene chromosomes and loops in lampbrush chromosomes are areas of intense transcription of RNA? (c) How did we learn that eukaryotic chromatin exists in the form of repeating nucleosomes, each consisting of about 200 base pairs and an octamer of histones? (d) How do we know that satellite DNA consists of repetitive sequences and has been derived from regions of the centromere?
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