Chapter 12: Problem 4
Describe the structure of giant polytene chromosomes and how they arise.
Chapter 12: Problem 4
Describe the structure of giant polytene chromosomes and how they arise.
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Get started for freeThe human genome contains approximately \(10^{6}\) copies of an Alu sequence, one of the best-studied classes of short interspersed elements (SINEs), per haploid genome. Individual Alu units share a 282 -nucleotide consensus sequence followed by a \(3^{\prime}\)-adenine-rich tail region (Schmid, 1998 ). Given that there are approximately \(3 \times 10^{9}\) base pairs per human haploid genome, about how many base pairs are spaced between each Alu sequence?
Describe the basic structure of a nucleosome. What is the role of histone H1?
Examples of histone modifications are acetylation (by histone acetyltransferase, or HAT), which is often linked to gene activation, and deacetylation (by histone deacetylases, or HDACs), which often leads to gene silencing typical of heterochromatin. Such heterochromatinization is initiated from a nucleation site and spreads bidirectionally until encountering boundaries that delimit the silenced areas. Recall from earlier in the text (see Chapter 4 ) the brief discussion of position effect, where repositioning of the \(w^{+}\) allele in Drosophila by translocation or inversion near heterochromatin produces intermittent \(w^{+}\) activity. In the heterozygous state \(\left(w^{+} / w\right),\) a variegated eye is produced, with white and red patches. How might one explain position-effect variegation in terms of histone acetylation and/or deacetylation?
An article entitled "Nucleosome Positioning at the Replication Fork" states: "both the 'old' randomly segregated nucleosomes as well as the 'new' assembled histone octamers rapidly position themselves (within seconds) on the newly replicated DNA strands" (Lucchini et al., 2002). Given this statement, how would one compare the distribution of nucleosomes and DNA in newly replicated chromatin? How could one experimentally test the distribution of nucleosomes on newly replicated chromosomes?
Supercoiled DNA is slightly unwound compared to relaxed DNA and this enables it to assume a more compact structure with enhanced physical stability. Describe the enzymes that control the number of supercoils present in the \(E .\) coli chromosome. How much would you have to reduce the linking number to increase the number of supercoils by five?
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