Chapter 12: Problem 11
In instances in the eukaryotic genome, DNA sequences represent evolutionary vestiges of duplicated copies of genes. What are such regions called and what are their characteristics?
Chapter 12: Problem 11
In instances in the eukaryotic genome, DNA sequences represent evolutionary vestiges of duplicated copies of genes. What are such regions called and what are their characteristics?
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Get started for freeIn this chapter, we focused on how DNA is organized at the chromosomal level. Along the way, we found many opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter, what answers would you propose to the following fundamental questions: (a) How do we know that viral and bacterial chromosomes most often consist of circular DNA molecules devoid of protein? (b) What is the experimental basis for concluding that puffs in polytene chromosomes and loops in lampbrush chromosomes are areas of intense transcription of RNA? (c) How did we learn that eukaryotic chromatin exists in the form of repeating nucleosomes, each consisting of about 200 base pairs and an octamer of histones? (d) How do we know that satellite DNA consists of repetitive sequences and has been derived from regions of the centromere?
While much remains to be learned about the role of nucleosomes and chromatin structure and function, recent research indicates that in vivo chemical modification of histones is associated with changes in gene activity. One study determined that acetylation of \(\mathrm{H} 3\) and \(\mathrm{H} 4\) is associated with 21.1 percent and 13.8 percent increases in yeast gene activity, respectively, and that yeast heterochromatin is hypomethylated relative to the genome average (Bernstein et al, 2000 ). Speculate on the significance of these findings in terms of nucleosome-DNA interactions and gene activity.
Variable number tandem repeats (VNTRs) are repeating DNA sequences of about 15 to 100 bp in length, found both within and between genes. Why are they commonly used in forensics?
Tandemly repeated DNA sequences with a repeat sequence of one to six base pairs-for example, (GACA) \(_{n}\) -are called microsatellites and are common in eukaryotes. A particular subset of such sequences, the trinucleotide repeat, is of great interest because of the role such repeats play in human neurodegenerative disorders (Huntington disease, myotonic dystrophy, spinal- bulbar muscular atrophy, spinocerebellar ataxia, and fragile-X syndrome). Following are data (modified from Toth et al., 2000 ) regarding the location of microsatellites within and between genes. What general conclusions can be drawn from these data? $$\begin{array}{lcc}\text { Taxonomic Group } & \text { Within Genes } & \text { Between Genes } \\ \text { Primates } & 7.4 & 92.6 \\ \text { Rodents } & 33.7 & 66.3 \\ \text { Arthropods } & 46.7 & 53.3 \\ \text { Yeasts } & 77.0 & 23.0 \\ \text { Other fungi } & 66.7 & 33.3\end{array}$$
The human genome contains approximately \(10^{6}\) copies of an Alu sequence, one of the best-studied classes of short interspersed elements (SINEs), per haploid genome. Individual Alu units share a 282 -nucleotide consensus sequence followed by a \(3^{\prime}\)-adenine-rich tail region (Schmid, 1998 ). Given that there are approximately \(3 \times 10^{9}\) base pairs per human haploid genome, about how many base pairs are spaced between each Alu sequence?
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