Chapter 12: Problem 10
Describe the transitions that occur as nucleosomes are coiled and folded, ultimately forming a chromatid.
Chapter 12: Problem 10
Describe the transitions that occur as nucleosomes are coiled and folded, ultimately forming a chromatid.
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Get started for freeThe human genome contains approximately \(10^{6}\) copies of an Alu sequence, one of the best-studied classes of short interspersed elements (SINEs), per haploid genome. Individual Alu units share a 282 -nucleotide consensus sequence followed by a \(3^{\prime}\)-adenine-rich tail region (Schmid, 1998 ). Given that there are approximately \(3 \times 10^{9}\) base pairs per human haploid genome, about how many base pairs are spaced between each Alu sequence?
Examples of histone modifications are acetylation (by histone acetyltransferase, or HAT), which is often linked to gene activation, and deacetylation (by histone deacetylases, or HDACs), which often leads to gene silencing typical of heterochromatin. Such heterochromatinization is initiated from a nucleation site and spreads bidirectionally until encountering boundaries that delimit the silenced areas. Recall from earlier in the text (see Chapter 4 ) the brief discussion of position effect, where repositioning of the \(w^{+}\) allele in Drosophila by translocation or inversion near heterochromatin produces intermittent \(w^{+}\) activity. In the heterozygous state \(\left(w^{+} / w\right),\) a variegated eye is produced, with white and red patches. How might one explain position-effect variegation in terms of histone acetylation and/or deacetylation?
Describe the structure of lampbrush chromosomes. Where are they located?
Cancer can be defined as an abnormal proliferation of cells that defy the normal regulatory controls observed by normal cells. Recently, histone deacetylation therapies have been attempted in the treatment of certain cancers (reviewed by Delcuve et al., 2009 ). Specifically, the FDA has approved histone deacetylation (HDAC) inhibitors for the treatment of cutaneous T-cell lymphoma. Explain why histone acetylation might be associated with cancer and what the rationale is for the use of HDAC inhibitors in the treatment of certain forms of cancer.
Telomeres are highly repetitive regions of heterochromatin, involved in the maintenance of the chromosome's structural integrity. The length of a telomere decreases with age and has been inversely linked to mortality. When the length goes below a critical limit, cells undergo senescence and/or apoptosis. Smoking, exposure to pollution, lack of physical activity, obesity, stress, and an unhealthy diet increase the oxidative burden and have all been shown to increase the rate of telo- mere shortening and aging. Discuss the importance of telomeres in the light of these facts.
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