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What would be the impact of the loss of processivity on DNA Pol III?

Short Answer

Expert verified
Answer: Reduced processivity in DNA Pol III may lead to decreased replication speed, increased error rates during replication, processing issues with Okazaki fragments, and potential compensation from other replication enzymes. Ultimately, these consequences may impact cellular viability, leading to slower replication, increased mutation rates, and potential genomic instability.

Step by step solution

01

Impact on replication speed

DNA Pol III with reduced processivity will dissociate from the template DNA more frequently during replication. This will significantly hinder replication progress since the enzyme will need to reattach multiple times, decreasing replication speed and elongation efficiency.
02

Impact on replication fidelity

Processivity is important for ensuring replication fidelity. DNA Pol III's increased dissociation rates due to lower processivity might lead to a higher error rate or more frequent stalling, as DNA Pol III might not be able to efficiently correct mismatched base pairs before detaching from the DNA.
03

Impact on Okazaki fragment processing

Loss of processivity in DNA Pol III may affect the processing of Okazaki fragments during lagging strand synthesis. Frequent dissociation of the enzyme may cause an increase in the number of Okazaki fragments, potentially affecting overall replication efficiency.
04

Compensation by other replication enzymes

Other replication enzymes, such as DNA Pol I or the sliding clamp (β clamp), may be able to partially compensate for the loss of processivity in DNA Pol III. However, this may not fully restore replication efficiency, and it might increase the chances of errors in DNA synthesis.
05

Overall impact on cellular processes

DNA replication is a fundamental process in cell division and growth. A significant reduction in processivity of DNA Pol III may have broad implications for cellular viability. It may lead to slower replication, increased mutation rates, and potential genomic instability, ultimately affecting normal cell function and potentially leading to a higher chance of disease or dysfunction.

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Most popular questions from this chapter

Many of the gene products involved in DNA synthesis were initially defined by studying mutant \(E .\) coli strains that could not synthesize DNA. (a) The \(d n a E\) gene encodes the a subunit of DNA polymerase III. What effect is expected from a mutation in this gene? How could the mutant strain be maintained? (b) The \(d n a Q\) gene encodes the \(\varepsilon\) subunit of DNA polymerase. What effect is expected from a mutation in this gene?

In this chapter, we focused on how DNA is replicated and synthesized. We also discussed recombination at the DNA level and the phenomenon of gene conversion. Along the way, we encountered many opportunities to consider how this information was acquired. On the basis of these discussions, what answers would you propose to the following fundamental questions? (a) What is the experimental basis for concluding that DNA replicates semiconservatively in both prokaryotes and eukaryotes? (b) How was it demonstrated that DNA synthesis occurs under the direction of DNA polymerase III and not polymerase I? (c) How do we know that in vivo DNA synthesis occurs in the \(5^{\prime}\) to \(3^{\prime}\) direction? (d) How do we know that DNA synthesis is discontinuous on one of the two template strands? (e) What observations reveal that a "telomere problem" exists during eukaryotic DNA replication, and how did we learn of the solution to this problem?

DNA polymerases in all organisms add only \(5^{\prime}\) nucleotides to the \(3^{\prime}\) end of a growing DNA strand, never to the \(5^{\prime}\) end. One possible reason for this is the fact that most DNA polymerases have a proofreading function that would not be energetically possible if DNA synthesis occurred in the \(3^{\prime}\) to \(5^{\prime}\) direction. (a) Sketch the reaction that DNA polymerase would have to catalyze if DNA synthesis occurred in the \(3^{\prime}\) to \(5^{\prime}\) direction. (b) Consider the information in your sketch and speculate as to why proofreading would be problematic.

Reiji and Tuneko Okazaki conducted a now classic experiment in 1968 in which they discovered a population of short fragments synthesized during DNA replication. They introduced a short pulse of \(^{3} \mathrm{H}\) -thymidine into a culture of \(E .\) coli and extracted DNA from the cells at various intervals. In analyzing the DNA after centrifugation in denaturing gradients, they noticed that as the interval between the time of \(^{3} \mathrm{H}\) -thymidine introduction and the time of centrifugation increased, the proportion of short strands decreased and more labeled DNA was found in larger strands. What would account for this observation?

Describe the role of \(^{15} \mathrm{N}\) in the Meselson-Stahl experiment.

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