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Describe the whole-genome shotgun approach.

Short Answer

Expert verified

The whole-genome shotgun approach involves multiple restriction enzymes to cut the genome into short fragments. The computer in this laboratory technique will assemble the generated short DNA fragments in a continuous sequence to identify overlapping regions.

Step by step solution

01

Genome within cell’s nucleus

The genetics and molecular biology field describe the genome as a single set of genes containing DNA within its structure. The genome provides genetic instructions to cells so that the fundamental unit of life can build, grow, and develop an organism.

The several functions associated with the genome are storage and expression of genetic information.

02

Bacteria producing restriction enzyme

The enzyme that identifies and then cleaves the specific site containing nitrogenous bases within the same nucleic acid (double-stranded DNA) sequence on each strand of DNA double helix is called restriction enzyme. The restriction enzyme is isolated from a living organism, such as bacterial cells.

03

Genome sequencing in the whole-genome shotgun approach

The laboratory method that isolates genomic DNA and then the fragmentation of genomic DNA carries through restriction endonucleases for genome sequencing is called the whole-genome shotgun approach.

The single-step processing is done by the shotgun approach to analyze the whole genome, which is randomly broken down and assembled through the computer at a single instance.

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Most popular questions from this chapter

Make an ordered list of all the percent identity values from the table, starting with 100% at the top. Next to each number write the globin pair(s) with that percent identity value. Use one color for the globins from the ฮฑ family and a different color for the globins from the ฮฒ family. (a) Compare the order of pairs on your list with their positions in the model shown in Figure 21.14. Does the order of pairs describe the same relative โ€œclosenessโ€ of globin family members seen in the model? (b) Compare the percent identity values for pairs within the ฮฑ or ฮฒ group to the values for between-group pairs.

Bioinformatics includes all of the following except

(A) using computer programs to align DNA sequences.

(B) using DNA technology to combine DNA from two different sources in a test tube.

(C) developing computer-based tools for genome analysis.

(D) using mathematical tools to make sense of biological systems.

Assign each DNA segment at the top of Figure 18.8 to a sector in the pie chart in Figure 21.6.

Below are the amino acid sequences (using the single-letter code; see Figure 5.14) of four short segments of the FOXP2 protein from six species: chimpanzee (C), orangutan (O), gorilla (G), rhesus macaque (R), mouse (M), and human (H). These segments contain all of the amino acid differences between the FOXP2 proteins of these species.

Use a highlighter to color any amino acid that varies among the species. (Color that amino acid in all sequences.)

  1. The C, G, R sequences are identical. Identify which lines correspond to those sequences.
  2. The H sequence differs from that of the C, G, R species at two amino acids. Underline the two differences in the H sequence.
  3. The O sequence differs from the C, G, R sequences at one amino acid (having V instead of A) and from the H sequence at three amino acids. Identify the O sequence.
  4. In the M sequence, circle the amino acid(s) that differ from the C, G, R sequences, and draw a square around those that differ from the H sequence.
  5. Primates and rodents diverged between 60 and 100 million years ago, and chimpanzees and humans about 6 million years ago. Compare the amino acid differences between the mouse and the C, G, R species with those between the human and the C, G, R species. What can you conclude?

Discuss the characteristics of mammalian genomes that make them larger than prokaryotic genomes.

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